MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.29038598554782885
cnr4.351738420509524
efc0.5996037632297861
fber81.29347229003906
fwhmavg3.85759
fwhmx3.79442
fwhmy4.05932
fwhmz3.71903
icvscsf0.21228864452202484
icvsgm0.4562967098385878
icvswm0.3314146456393874
inumed1.209787368774414
inurange0.3207189321517945
qi10.0
qi20.0006915750988185449
rpvecsf26.812571721757376
rpvegm13.613594262155997
rpvewm21.542453670951204
sizex180
sizey256
sizez256
snrcsf2.8307251120944175
snrgm10.572644794521809
snrtotal11.081608775099753
snrwm19.84145641868303
snrdcsf14.509922666705357
snrdgm31.91937121200417
snrdtotal31.867582995180797
snrdwm49.17345510683287
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.8674862205646927
summarybgmad13.323065757751465
summarybgmean53.508426666259766
summarybgmedian52.53120803833008
summarybgn3084008.0
summarybgp0533.13413581848145
summarybgp9577.5336009979248
summarybgstdv13.849737167358398
summarycsfk0.5659689806473174
summarycsfmad102.39579010009766
summarycsfmean309.6902770996094
summarycsfmedian295.0784912109375
summarycsfn18471.0
summarycsfp05161.04680633544922
summarycsfp95495.1830291748047
summarycsfstdv104.23848724365234
summarygmk0.16599631645930435
summarygmmad59.391685485839844
summarygmmean650.6831665039062
summarygmmedian649.1226806640625
summarygmn29849.0
summarygmp05551.6877563476563
summarygmp95754.8654663085936
summarygmstdv61.39540481567383
summarywmk1.1227244812438677
summarywmmad42.50029754638672
summarywmmean993.639404296875
summarywmmedian1000.00732421875
summarywmn156806.0
summarywmp05895.7222595214844
summarywmp951064.2211303710938
summarywmstdv50.39973449707031
tpmoverlapcsf0.2201777994632721
tpmoverlapgm0.5344631671905518
tpmoverlapwm0.546205461025238
wm2max0.5950146479178489

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum6f2954813d8d2bc3684bd5c32ed7fe48
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.