MRIQC: individual T1w report

Summary

Subject ID: 022_ControlPre.
Date and time: 2018-05-31, 19:31.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.29038598554782885
cnr			4.351738420509524
efc			0.5996037632297861
fber			81.29347229003906
fwhm	avg		3.85759
fwhm	x		3.79442
fwhm	y		4.05932
fwhm	z		3.71903
icvs	csf		0.21228864452202484
icvs	gm		0.4562967098385878
icvs	wm		0.3314146456393874
inu	med		1.209787368774414
inu	range		0.3207189321517945
qi	1		0.0
qi	2		0.0006915750988185449
rpve	csf		26.812571721757376
rpve	gm		13.613594262155997
rpve	wm		21.542453670951204
size	x		180
size	y		256
size	z		256
snr	csf		2.8307251120944175
snr	gm		10.572644794521809
snr	total		11.081608775099753
snr	wm		19.84145641868303
snrd	csf		14.509922666705357
snrd	gm		31.91937121200417
snrd	total		31.867582995180797
snrd	wm		49.17345510683287
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.8674862205646927
summary	bg	mad	13.323065757751465
summary	bg	mean	53.508426666259766
summary	bg	median	52.53120803833008
summary	bg	n	3084008.0
summary	bg	p05	33.13413581848145
summary	bg	p95	77.5336009979248
summary	bg	stdv	13.849737167358398
summary	csf	k	0.5659689806473174
summary	csf	mad	102.39579010009766
summary	csf	mean	309.6902770996094
summary	csf	median	295.0784912109375
summary	csf	n	18471.0
summary	csf	p05	161.04680633544922
summary	csf	p95	495.1830291748047
summary	csf	stdv	104.23848724365234
summary	gm	k	0.16599631645930435
summary	gm	mad	59.391685485839844
summary	gm	mean	650.6831665039062
summary	gm	median	649.1226806640625
summary	gm	n	29849.0
summary	gm	p05	551.6877563476563
summary	gm	p95	754.8654663085936
summary	gm	stdv	61.39540481567383
summary	wm	k	1.1227244812438677
summary	wm	mad	42.50029754638672
summary	wm	mean	993.639404296875
summary	wm	median	1000.00732421875
summary	wm	n	156806.0
summary	wm	p05	895.7222595214844
summary	wm	p95	1064.2211303710938
summary	wm	stdv	50.39973449707031
tpm	overlap	csf	0.2201777994632721
tpm	overlap	gm	0.5344631671905518
tpm	overlap	wm	0.546205461025238
wm2max			0.5950146479178489

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	6f2954813d8d2bc3684bd5c32ed7fe48
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.